Garcia Sònia, Nualart Neus (eds.) Plant Genomic and Cytogenetic Databases

Humana Press, 2023. — 252 p. — (Methods in Molecular Biology 2703). — ISBN 978-1-0716-3389-2.This volume discusses the latest online plant genomics and cytogenetic resources used by plant evolutionary biologists and plant breeders. The chapters in this book are organized into two parts. Part One looks at plant genomic databases, and covers topics such as plant phenomics and genomics research data repositories, InpactorDB, PlanTEenrichment, and PEATmoss, among others. Part Two looks at cytogenetics and chromosome-related databases, and covers resources such as the Plant DNA C-values database, the Delphineae Chromosome Database (DCDB), B-chrom, a Database on B-chromosomes, and the Plant Ribosomal DNA Database. Written in the highly successful Methods in Molecular Biology series format, chapters include introductions to their respective databases and offers explicit directions on how to access and get the most of these resources. Cutting-edge and comprehensive, Plant Genomic and Cytogenetic Databases is a valuable instrument for any plant science researcher who is interested in learning more about the wealth of information that is available through the use of these databases.Genomic Databases
The Plant Phenomics and Genomics Research Data Repository:​ An On-Premise Approach for FAIR-Compliant Data Acquisition
Investigating Pangenome Graphs Using Wheat Panache
InpactorDB:​ A Plant LTR Retrotransposon Reference Library
TEMM:​ A Curated Data Resource for Transposon Element-Based Molecular Markers in Plants
PlanTEnrichment:​ A How-to Guide on Rapid Identification of Transposable Elements Associated with Regions of Interest in Select Plant Genomes
CicerSpTEdb2.0: An Upgrade of Cicer Species Transposable Elements Database
“BIFloraExplorer”:​ A Taxonomic, Genetic, and Ecological Data Resource for the Vascular Plants of Britain and Ireland
PEATmoss:​ A Gene Expression Atlas for Bryophytes
Cytogenetics and Chromosome-Related Databases
The Plant DNA C-Values Database:​ A One-Stop Shop for Plant Genome Size Data
The Chromosome Counts Database (CCDB)
CromoCat:​ Chromosome Database of the Vascular Flora of the Catalan Countries—25 years
An Overview to the Index to Chromosome Numbers in Asteraceae Database:​ Revisiting Base Chromosome Numbers, Polyploidy, Descending Dysploidy, and Hybridization
DCDB: Chromosome Database of Tribe Delphinieae (Ranunculaceae): Structure, Exploitation, and Recent Development
Chilean Plants Cytogenetic Database:​ An Online Resource for Embryophytes of the Southern Cone
The Data Portal “Chromosome Numbers of the Flora of Germany”:​ Progress After Five Years, Recent Developments, and Future Strategies
South American Plant Chromosome Numbers Databases:​ The Information We Have and the Information We Lack on the Most Plant-Diverse Continent
First Update to B-Chrom:​ A Database on B-Chromosomes
Release 4.​0 of the Plant rDNA Database:​ A Database on Plant Ribosomal DNA Loci Number, Their Position, and Organization:​ An Information Source for Comparative Cytogenetics