Marchisio M.A. (Ed.) Computational Methods in Synthetic Biology

Humana Press, 2015 — 358p. — (Methods in Molecular Biology 1244) — ISBN: 978-1-4939-1878-2 (eBook), 978-1-4939-1877-5 (Hardcover).This volume provides complete coverage of the computational approaches currently used in Synthetic Biology. Chapters focus on computational methods and algorithms for the design of bio-components, insight on CAD programs, analysis techniques, and distributed systems. Written in the highly successful Methods in Molecular Biology series format, the chapters include the kind of detailed description and implementation advice that is crucial for getting optimal results in the laboratory.
Authoritative and practical, Computational Methods in Synthetic Biology serves as a guide to plan in silico the in vivo or in vitro construction of a variety of synthetic bio-circuits.Computational Protein Design Methods for Synthetic Biology
Computer-Aided Design of DNA Origami Structures
Computational Design of RNA Parts, Devices, and Transcripts with Kinetic Folding Algorithms Implemented on Multiprocessor Clusters
Regulatory RNA Design Through Evolutionary Computation and Strand Displacement
Programming Languages for Circuit Design
Kappa Rule-Based Modeling in Synthetic Biology
Modular Design of Synthetic Gene Circuits with Biological Parts and Pools
Computationally Guided Design of Robust Gene Circuits
Chemical Master Equation Closure for Computer-Aided Synthetic Biology
Feedback Loops in Biological Networks
Efficient Analysis Methods in Synthetic Biology
Using Computational Modeling and Experimental Synthetic Perturbations to Probe Biological Circuits
In Silico Control of Biomolecular Processes
Stochastic Modular Analysis for Gene Circuits: Interplay Among Retroactivity, Nonlinearity, and Stochasticity
Distributed Model Construction with Virtual Parts
The Synthetic Biology Open Language
Computational Methods for the Construction, Editing, and Error Correction of DNA Molecules and Their Libraries